There are some tools to help with cross compiling issues. One of the best I
tried is sbox2
http://www.freedesktop.org/wiki/Software/sbox2
Sponsored by Nokia, it is used as a build system for their N810 gadget (arm
based, Maemo interface).
It takes care of keeping separate host tools and libraries from target
libraries (and tools) and is clever enough to execute target code throu qemu
when needed (in configure step for instance).
You can even use some host tools, like host java compiler, to generate code for
target...
And you can use whatever toolchain you like.
If you start from busybox, it is not that hard to get to working target root
file system.
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